Anonymous Commenter, Clare Francis, Defamation lawsuit, First Amendment, Joshua Cherry, Joshua L. Cherry, Joshua L. Cherry NIH, Nature, NCBI, NIH, Post publication peer review, Post Publication Peer Review Scam, PubPeer, Reputation Damage, Research Integrity, Scientific corruption

The Travesty of Post Publication Peer Review

 It is well known that Chinese people have a practical and pragmatic bent. I recall having asked a successful professor what it would take to publish in Nature. He replied:

“You need to do very good work, make a lot of friends in your field and, above all, make sure to befriend the editors. To secure publications in good journals it is always best to start a courtship with the editors, find out what gets them excited. This approach often bears fruit.”

The whole publishing game seemed quite cynical to me at the time. Eventually, that conversation lead me to quit science altogether.

An untold truth in science is that success rests primarily on who you know, rather than on the merits of your work. Not surprisingly, the mechanism to protect the integrity of research reporting, the peer review (PR) system, has turned into a true scam, corrupt to the marrow. The anonymity of the PR process, implemented originally to guarantee freedom of opinion, in practice has become a vehicle for reviewers to promote their self-serving agenda, encouraging ax-grinding by the author’s competitors and complacency by the author’s friends. Editors contribute substantively to the scam by cherry-picking reviewers for the authors they like and rejecting papers without even sending them out for review (often to reduce their workload) whenever the author is not perceived as influential enough to bring them some benefit by treating him well.

If PR is a scam, post-publication peer review (PPPR) is a travesty to a grotesque degree. Here we don’t even know if the reviewers are the actual peers of scientists or simply angry frustrated people trying to bring down the authors. Our own polls conducted on 11 scientific publishers reveal that over 90% of anonymous PPPR is not pursued by the journals after it is found to be frivolous.  At least in PR, the journal editors are entrusted by the scientific establishment with picking reviewers who are supposed to be the author’s peers. But with PPPR, anything goes, as people with no verifiable credentials are allowed to hide in their anonymity to take comfortable shots at whoever they pick as their target.  At Science Transparency we have identified one such sniper: Joshua L. Cherry, the NIH/NCBI contractor still on the loose.

PPPR has thus turned into a farce where anyone gets to say anything, no matter how crass his views are. The channel for these people is the internet, the vast repository where angry people get to pour their vitriol and get the feeling that they are being heard. This matter is admirably described in an article entitled “Why Is Everyone on the Internet So Angry?” that seeks to identify the psychological root of the problem.

Of course, the root of the PPPR phenomenon and the anger it promotes can be found in the internet. “These days, online comments have become extraordinarily aggressive without resolving anything,” said Art Markman, a professor of psychology at the University of Texas at Austin.  Yet, the possibility of an anonymous attack offers a vehicle of self-realization for the frustrated scientist, and the internet enables this possibility and enables the person to be heard, finally! This emboldens him and fuels his anger.

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Artificial windpipes, Bengt Gerdin, Clare Francis, Data Fabrication, Data Falsification, Due process, Fake Peer Review, First Amendment to US Constitution, Ivan Oransky, Karolinska Institut, Misconduct, Nature, Paolo Macchiarini, Post publication peer review, PubPeer, Retraction Watch, Science Journal, Scientific Misconduct, Scientific Research, Transplant surgery

Science properly correcting itself: The handling of alleged misconduct in claims by Paolo Macchiarini

According to a recent investigation, surgeon Paolo Macchiarini from the Karolinska Institute in Stockholm has allegedly committed scientific misconduct in his reporting of results from patient transplants of synthetic tracheas seeded with stem cells. The misconduct investigation 39-page report drafted by Bengt Gerdin, a professor at Uppsala University, reveals that in six published papers, author Paolo Macchiarini had deliberately and knowingly misrepresented or falsified medical data from recipients of the artificial tracheas. The papers allegedly boosted the results of the transplant operations making them appear far more more successful than they really were. The investigation also found that two of the papers described procedures that did not get ethical approval (Lancet 378, 1997–2004 (2011) and Biomaterials 34, 4057–4067; 2013), and that a seventh paper by Macchiarini (Nature Commun. 5, 3562; 2014) also contained fraudulent results.

The investigation launched by the Karolinska Institute began after four physicians at the institution, who were involved in the care of  Macchiarini’s transplant patients, filed formal complaints. The physicians identified themselves as Karl-Henrik Grinnemo, Matthias Corbascio, Thomas Fux and Oscar Simonson and provided medical records that are at odds with the results published by Macchiarini.

Irrespective of the validity of the misconduct findings by Bengt Gerdin, there seems to be at least one fundamental difference between this investigation and the ones prompted by the intrigues and attacks launched by PubPeer-Retraction Watch-Clare Francis contributors. In the Macchiarini case the accusers revealed their identities and proved that they were peers of the person they were accusing. In other words, they behaved as honest people would do and followed the standard course of action that science has developed to handle allegations of scientific misconduct. In addition, the procedure followed by the Karolinska Institute is the one that science has always accepted and has been in place for centuries, since the inception of scientific reporting.

By contrast, the feeders of the PubPeer-Retraction Watch-Clare Francis ring live in a world where you just sit on the outside of science and, while hiding in anonymity, take shots at those doing the actual work. Who the heck are these people at Retraction Watch and PubPeer anyway? Whose peers are they? These abominable practices must come to an end, but that will only happen when people realize that there is a fundamental difference between the way the Swedish Karolinska Institut reacted upon the allegations of four Macchiarini peers and the way amateurish editors handle the accusations by Clare Francis.

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Adam Marcus, Anonymous Commenter, Blog, Cat Ferguson, Character Assassination, Civil Death, Corruption, Data Fabrication, Data Falsification, Fraud, Haruko Obokata, Hatred, Ivan Oransky, Japanese science, Junk Journalism, lawsuit, Michael Eisen, Misconduct, Nature, Nature retraction, Obokata, Peer Review, Post publication peer review, protected free speech, Retraction Watch, Retractions, Riken, Science Garbage Man, Scientific Misconduct, STAP stem cell, Suicide, Wild Web, Yoshiki Sasai

Retraction Watch: Toxic Scientific Journalism for the Wild Web

We are often forced to highlight the toxicity of Retraction Watch, a blog that professes to cover scientific mishaps. Retraction Watch has turned into a beacon of junk scientific journalism, fit for the Wild Web. At Retraction Watch there is no publication barrier but there surely is an agenda: anybody says whatever he/she wants and gets published provided that what is said fits the agenda of RW founders Adam Marcus and Ivan Oransky. In Ivan Oransky’s own words, “we hold firm to the notion that the more robust the conversation, the better the science”. Huh? Sure, but the validity of this utterance hinges crucially on what Oransky means by “robust conversation”. I, for one, have never seen a robust conversation leading to the betterment of science at Retraction Watch. Furthermore, I have never seen a conversation at Retraction Watch that is even relevant to science. When I find such utterances by Oransky I ask myself: How can he say this with a straight face? Do we really need to deal with this level of absurdity? I would have hoped not, but I guess we need to. We’ll come back to the “robust conversations” at Retraction Watch in a while.

Oransky
The source of the picture is this article at Yale Medicince.

Ivan Oransky brags about many things, his long list of affiliations always featuring prominently, and he often insists on the large number of hits at Retraction Watch, as if the large number of hits were a measure or indicator of content quality. By that token, “Gangnam Style” would surely surpass Bach’s St. Matthew Passion. We all know that vulgarization of science, and especially of science mishaps, will always sell far better than science itself. That does not make science vulgarization any better than science as a generator of meaning or content. Not surprisingly, Retraction Watch founder Ivan Oransky has been named Science’s Garbage Man (Muellsammler der Wissenschaft) by the Swiss Radio and Television.

Perhaps nowhere is the toxicity of Retraction Watch more apparent than in the words of its own founder Ivan Oransky as he discusses the tragic loss of Japanese scientist Yoshiki Sasai to suicide. Sasai, as we recall, was a major player in the team who worked on the now-discredited STAP stem cell work. By all accounts, Sasai was an honest man but had the misfortune of working with an allegedly dishonest colleague, and his choice of suicide as a form of atonement proved to be one the most tragic turns of science in the Retraction Watch era.

This tragedy has drawn Berkeley biologist Michael Eisen into the debate, as he lost his own father, a notable NIH scientist, to a similar tragic turn. In this case, as in the Sasai case, someone not directly involved in misconduct got the cold shoulder of the scientific community for being associated with an alleged fraudster.

There is hardly any doubt that Retraction Watch, with its undignified opportunistic style of coverage of scientific mishaps, has substantively contributed to this toxic environment. I would not be surprised if the ruthless exposure of the STAP stem cell mishap by Retraction Watch, with its significant traction on the web, contributed in some way to trigger the tragic demise of Yoshiki Sasai. It is obviously up to Sasai’s family and to the incumbent Japanese authorities to take this case to Court if they see fit.

In addressing the accusations that Retraction Watch is poisoning the scientific environment, Ivan Oransky had this to say:

“But we firmly believe that cataloging and probing the symptoms of some of these problems — in our case, that means retractions — is a good way to check the health of transparency in science.
What goes along with that is our belief that a vigorous and open debate is crucial to science. For that reason, we allow our thousands of commenters substantial latitude in their posted opinions.”

Oransky’s idea is, in my opinion, perplexingly stupid. It opens the gates for a flood of nonsense poured into the web with no restraint. Can you imagine bringing anybody into a “vigorous open debate for the benefit of science”? What kind of outcome would you expect from having a bunch of nobodies and angry people opine often anonymously on scientific matters? And who conducts this debate? Ivan Oransky? Adam Marcus? or perhaps the Retraction Watch intern Cat Ferguson? What kind of scientific credentials do these people have to conduct any form of scientific debate? None whatsoever, as far as we can tell.

Along the same crassness, Ivan Oransky carries on:

“We can always do better in our comment moderation. But we hold firm to the notion that the more robust the conversation, the better the science.”

Sure, Mr. Oransky, but the catch here is the competence and intellectual acumen of the people that Retraction Watch allows to be involved in what you call “the robust conversation”! By “robust conversation” do you mean the kind of absurd and often malicious drifting that you and your commenters engage in at Retraction Watch? Contrasting Oransky’s statement with the grotesque reality of Retraction Watch makes me wonder if Oransky is being serious or sardonically factitious. Tragically, I think he really meant what he said, as he repeated the same statement twice in the same post.

The kind of journalism embodied by Retraction Watch, with no publication barriers and with thousands of unqualified people allowed to freely comment on any scientific controversy, is actually very dangerous and very demeaning to science.

RELATED READING:
Ivan Oransky at Yale Medicine.
Sasai’s suicide covered by The Boston Globe
Stem cell work is allegedly fraudulent (The Boston Globe)

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Argentina, Ariel Fernandez, Ariel Fernandez book, Ariel Fernandez Publications, Ariel Fernandez Research, Dehydron, 阿列尔·费尔南德斯, Hasselmann Professor at Rice University, Joshua Cherry, Joshua L. Cherry, Joshua L. Cherry NIH, Michael Lynch, Nature, Nature Addenda, NIH, Republic of China, Rice University News, Sze-Bi Hsu, Taiwan, Tsing-Hua University, Wen-Hsiung Li

The Nature-Related Research by Ariel Fernandez at the Republic of China

“Residents and interns worked a lot of hours, and I wrote honestly about what it was like to be an intern. One of the deans wasn’t crazy about that. It reminded me that my core identity is as a journalist, constantly challenging things…Blogs are powerful and lower the publishing barrier.”
Ivan Oransky

This post constitutes a bit of a digression but a justified one since the research I intend to discuss served as the basis for a professional paper recently exposed by junk journalism (see our previous entry). Here I vindicate Professor Ariel Fernandez (阿列尔·费尔南德斯), the discoverer of the dehydron (脱水元) and a remarkably creative and imaginative physical chemist and mathematician -as attested by his publications– who recently had his share of spats with the blog-based junk journalism. I am specifically referring to the coverage of the so-called “post-publication peer review” of one of the doctor’s papers in Nature (see the previous post). This paper was challenged by Joshua Cherry, a person of unreported and unverified employment at NIH. Joshua Cherry corresponded extensively with Ariel Fernandez before deciding to operate hiding in anonymity once Dr. Fernandez alerted him that he needed to learn the subject before writing reviews. The blog-based type of journalism that covered the Nature story is completely unedited, not subject to scientific peer review and not subject to the most elementary standards of science. Driven by angry nobodies seeking notoriety, the Marcus-Oransky blog lies outside the scientific establishment, actually doing a disservice to science. Internet enables the exchange of information at unprecedented levels, but it also enables any person, however deranged, to pour his or her madness, and make it universally accessible without even having to disclose his or her identity. Fortunately, the majority of scientists do not take such journalism any more seriously that they would take a blog on the healing powers of the pyramids.

oransky fernandez
The source of the picture on the left is this article at Yale Medicince.

Dr. Ariel Fernandez is no stranger to Chinese audiences (Wikipedia Biosketch for Ariel Fernandez in Mandarin). I first became acquainted with him in 2008, when he delivered a lecture (poster and announcement below) at the Genomics Research Center in Academia Sinica, Republic of China. His host at the time was none other than Wen-Hsiung Li, the James Watson Professor at the University of Chicago and a towering figure in the field of molecular evolution. On that occasion, Ariel Fernandez lectured on the exploitation of evolutionary concepts to optimize drug design, an extremely original idea. The lecture introduced the key concept of dehydron, a sticky structural defect in proteins that is not conserved across homologous proteins. This lack of conservation makes dehydrons crucial selectivity filters for drug discovery, an idea later fleshed out in Ariel Fernandez’s first book “Transformative Concepts for Drug Design: Target Wrapping“. It was a mesmerizing lecture.

Ariel Fernandez lectures at Academia Sinica

Ariel Fernandez lecture announcement

Our second encounter took place in Hsinchu the next year, in 2009, when Ariel Fernandez began a series of visits to the National Tsing-Hua University sponsored in part by the Ministry of Education of the Republic of China (see illustration below). These visits hosted by Mathematics professor Sze-Bi Hsu led to the maturation of a revolutionary idea: introducing insights from structural biology into evolutionary biology, turning the latter more quantitative and precise. These thoughts eventually led to the Nature paper formerly coauthored by Michael Lynch. The seminal ideas by Ariel Fernandez at the National Tsing-Hua University, together with their ramifications in the field of aberrant aggregation-related disease, were enthusiastically reviewed at that institution, as shown in their “high-scope article” here.

Ariel Fernandez at Tsing-Hua University

Ironically, it was Michael Lynch who heralded these discoveries in auspicious terms. Thus, in 2009, Lynch had this to say to Rice University News and Media:
“One aspect of Ariel Fernandez’s research that is potentially groundbreaking is the observed tendency of proteins to evolve a more open structure in complex organisms”.
“This observation fits with the general theory that large organisms with relatively small population sizes — compared to microbes — are subject to the vagaries of random genetic drift and hence the accumulation of very mildly deleterious mutations”.

The liason of Ariel Fernandez with the Republic of China seems to be a long-lasting one. We are indeed fortunate that he has become a frequent visitor to the Mathematics Division at the National Center for Theoretical Science. His lecture last year is still announced here.

Taiwan lecture 1

It is not uncommon to see him announced on short notice, like in the poster below for an inpromptu lecture at Chiao Tung University on recent developments of the ideas he first brought to us at Academia Sinica five years earlier.

Ariel Fernandez Chiao Tung Univ

Dr. Fernandez, come back. We miss you!

RELATED READING:

Ariel Fernandez, Nature 474, 502-505 (2011)

Ariel Fernandez Innovation

Ariel Fernandez Consultancy

Wikipedia Biosketch of Ariel Fernandez in Mandarin

Ariel Fernandez featured in Baidu Encyclopedia (Mandarin)

Ariel Fernandez Scientist/Consultant

Ariel Fernandez Blog

Ariel Fernandez Book

Ariel Fernandez CV

Ariel Fernandez Google Scholar Citations

Ivan Oransky at Yale Medicine

Ariel Fernandez New Book (June 14, 2015)

 

Baidu 3

Ariel Fernandez featured in Baidu Encyclopedia.

 

RECENT COMMENTS (SEARCH UNDER COMMENTS)

LIPING says:
I love your inclusion of Oransky’s quote. In plain English it reads: SCIENCE IS HARD, TRASHING IT, AS WE DO AT RETRACTION WATCH, IS SO MUCH EASIER!
DECEMBER 6, 2014 AT 11:07 PM

WEISHI MENG says:
That is the translation, yes. Sad and tragic. It takes all kinds, I guess…
DECEMBER 6, 2014 AT 11:16 PM

TOBY says:
The towering Dr. Ariel Fernández is very good looking (was he photographed by El Greco or does he really share the build of a Mantis religiosa?), and Oransky is clearly a nasty bon viveur, jealous of the big man and who needs to start jogging if he wants to compete in the same scientific and glamorous world as our hero.
Also Oransky, learn one thing: one always has a better side for the pictures. Discover which one is yours and use it in all photos. Learn something from the aristos you good for nothing former headshrink!
DECEMBER 9, 2014 AT 1:38 PM

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Adam Marcus, Argentina, Ariel Fernandez, Ariel Fernandez Publications, Ariel Fernandez Research, Ariel Fernandez ResearcherID, Buenos Aires, Cat Ferguson, 阿列尔·费尔南德斯, Ivan Oransky, Joshua Cherry, Joshua L. Cherry, Michael Lynch, Nature, Nature Addenda, NCBI, NIH, Peer Review, Post publication peer review, PubMed, Scientific publication, Scientific Research, Swiss Radio and Television, Weishi Meng on Ariel Fernandez

Post Publication: Interview with Dr. Ariel Fernandez on a Nature Paper Controversy (Ten more minutes added on 12/2)

As a glance at his CV reveals, Dr. Ariel Fernandez (阿列尔·费尔南德斯), the discoverer of the dehydron (脱水元), is a very creative physical chemist and mathematician, a key player in the recent biotechnology transformation. His research has been heralded in auspicious terms, as illustrated for example in this review published in Scientific American. The breadth of research accomplishments of Ariel Fernandez, ranging from abstract algebra to drug design is breathtaking and probably unheard of in science (see a linked version of his publication record). In his ResearcherID page, Thomson/Reuters estimated that Ariel Fernandez has published 485 professional articles, book chapters included. His innovative drug designs were enthusiastically received by eminent doctors such as Thomas Force (Vanderbilt University) and were also reported in laudatory terms, as shown for example in this review by legendary Harvard oncologist George Demetri. Quoting Dr. Demetri:

“The first generation of kinase-inhibitory drugs such as imatinib and sunitinib have already provided patients with life-saving therapeutic options, and with tools such as those described by Fernández et al., the future certainly looks bright for constructing ever-better agents that can be combined safely and effectively to manage, and eventually cure, many forms of human cancer”.

Dr. Ariel Fernandez

Dr. Ariel Fernandez

In a recent collaboration with eminent cardiologist Richard L. Moss, Dr. Ariel Fernandez came up with a potential treatment of heart failure by disrupting a myosin association with a myosin-regulatory protein, a novel invention recently awarded the US patent 9,051,387. You may find descriptions of this invention at: US Patent and Trademark Office page, Espacenet page, University of Wisconsin-Madison, Ariel Fernandez Consultancy, Academia.edu, Ariel Fernandez’s professional page.

In spite of this stellar career and in spite of his efforts to fight cancer and heart failure, Dr. Ariel Fernandez is not impervious to slander. In the new era of post publication peer review, where anybody says whatever they like without even revealing his identity or his credentials, Dr. Ariel Fernandez has been the target of libel. In this note, Dr. Ariel Fernandez reflects on post-publication peer review in light of a recent attack by journalist Ivan Oransky, the self-proclaimed champion of scientific transparency, who has been recently named Science’s Garbage Man (Muellsammler der Wissenschaft) by the Swiss Radio and Television. In his post, Oransky mentions a Note that Nature Editors appended as Addendum to a Nature paper by Ariel Fernandez.

oransky fernandez
The source of the picture on the left is this article at Yale Medicince.

WM: Thank you doctor for agreeing to talk to us on such short notice. What was your reaction to the recent post by Ivan Oransky (and Adam Marcus) published in their blog in regards to your Nature paper?

Ariel Fernandez: It is hard for me to understand the motivation for such posts by Ivan Oransky and Adam Marcus and for some of the comments in their blog. The story is thin on reality. It reads like an attack. These people seem angry (they surely sound angry) and probably think they will get some credit for doing what they do. Meanwhile, the science establishment is not taking the needed leadership in regards to post-publication assessment and in regards to fixing the peer review system.

WM: Why do you think Oransky dislikes you?

Ariel Fernandez: I don’t think our paths ever crossed, I don’t even know him. I heard he is a doctor, and that he is smart. There are many wonderful things that a smart doctor can do, what Oransky is doing is not one of them.

WM: Can you tell us what are the news exactly?

Ariel Fernandez: The Addendum published by the Nature Editors on my paper [Ariel Fernandez, Nature 474, pages 502-5 (2011)] exposes a controversy between the two authors of the paper, former author Michael Lynch and me. This is hardly a news item. Lynch and I have a disagreement on the data and what it means. The Nature addendum is appended to the paper at the url:

http://www.nature.com/nature/journal/v474/n7352/full/nature09992.html

I posted my own tutorial on the Nature paper, including the code, raw data and statistical analysis in compliance with the open data mandate. Anybody interested can help clarify the matter if he/she so choses.

WM: How did this problem originate?

Ariel Fernandez: As I recall, in November of 2011, a Joshua Cherry, a sort of contractor (?) at NIH/NCBI first contacted me indicating that he wanted to reproduce my data in the Nature paper. After exchanging dozens of mails, I offered him a tutorial, because I realized he had little or no background in biophysics. He rejected my tutorial and from then on began challenging my papers. Now, why would a person with no background in my field decide to challenge my papers is a mystery to me. This fellow Joshua Cherry is behind the attacks on my work and my person. He seems somewhat obsessed (?) with me for some reason. Now, from what I can see, Cherry has authored some reasonable papers on population dynamics, yet he invests heavily on the downfall of someone working in a field he knows nothing about?

WM: That is odd.

Ariel Fernandez: The most important lesson to be drawn from this incident requires that we all take the high ground and ask ourselves: How should post-publication peer review be conducted? I believe there is only one way which has been the way of science for centuries: If anyone feels the need to challenge a published paper, the person should send the comments to the journal where the original work was published, request that his/her comments be subject to peer review and if they pass peer review, the objections should be published side by side with the response by the original author for everybody to examine and draw conclusions. The rest, including Oransky’s blog, is just noise.

WM: Doctor, I heard rumors that you and I are the same person.

Ariel Fernandez: Well, let’s see. You surely sound quite different from me and I don’t have any Chinese ancestry to speak of…

WM: Thank you doctor, have a good evening.

Ten more minutes on the phone with Dr. Ariel Fernandez (12/2/2014)

07

WM: Did you read the comments at the blog run by Ivan Oransky and Adam Marcus?

Ariel Fernandez: I read a bunch, then it got too silly with the Meng-Fernandez duality and I took my dog for a walk. It made me sad that these people cannot seem to be able to take the high ground on the broad issues at stake.

WM: Yes, they seem to dwell on whether I am a real person or whether you are actually me, or dual realities, or God knows what. Totally immaterial, like asking whether the characters in Plato’s dialogues are real or fake and take away merit if the latter were the case (I prepared that one beforehand, by the way). So, what are the issues at stake?

Ariel Fernandez: As I see it, the only thing worth focusing on is the failure of the peer review system. If the system were water- tight, there would be no need for PPPR [post publication peer review], of course. There are core issues worth focusing on: lobbying, editor courtship, fake reviewers, and cronyism in the peer review system.

WM: Well, so what do we do then?

Ariel Fernandez: Many journals are simply too amateurish to lead in this crisis, and the absence of leadership in times of crisis, often leads to bad things as we all know too well. Opportunists take over, as history has shown time and again. A leadership void has been created concurrently with the peer review crisis and, quite opportunistically, the blog by Ivan Oransky and the other fellow fills in that void. It is a bad thing but it has managed to parasite over the space available, fits right in there. Tragically, everybody watches in complete stupor while these people run the agenda.

WM: OK, so what do we (you and me) do?

Ariel Fernandez: Well, we keep it up. We help them realize that there is a loftier pursuit than indulging in the trigger-happy nonsense of the blog. We try to educate the bloggers and commenters because we believe that there is a higher ground and that they can truly contribute. Oransky, for one, is possibly a very smart person and could do plenty of good.

WM: And the lofty pursuit is…

Ariel Fernandez: Help the establishment fix the peer review system by showing concrete failures of peer review and how we can learn from the mistakes to make improvements, how we can introduce better ways to safeguard the integrity of reported work with concrete working examples while fighting the problems alluded to previously. Above all, ensure that if and when PPPR becomes an absolute necessity, it is subject to the standards that science has upheld for centuries, since professional journals came into existence. In this pursuit there is no room for Ivan Oransky or the other fellow, or the commenters, unless they choose to get serious about fixing the system and stop being silly. Vulgarization of career mistakes and tragic turns of fortune is not going to get them anywhere (except in the eyes of the angry mob of losers in science who invest in the downfall of the winners). They need to help device clever ways to deal with and combat scientific corruption at its root.

WM: My pleasure again doctor, enjoy the rest of the day.

RELATED READING:

Ariel Fernandez and Michael Lynch (2011) Nature 474, 502-505

Disclaimer by Ariel Fernandez

Ariel Fernandez complete CV updated May 18, 2015

Ariel Fernandez featured in Baidu Encyclopedia (Mandarin)

Books by Ariel Fernandez

Ariel Fernandez at ResearchGate

Curriculum Vitae for Ariel Fernandez

The Peer Review Crisis by Ariel Fernandez

Rice University Faculty Catalogue

Ariel Fernandez Consultancy

Transformative Concepts for Drug Design: Target Wrapping, Book by Ariel Fernandez, Springer, 2010

Ariel Fernandez Professional Website

Biomedical Research by Ariel Fernandez, NIH

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Adam Marcus, Cat Ferguson, Data Fabrication, Data Falsification, Diederik Stapel, Expression of concern, Fraud, Hatred, Ivan Oransky, McCarthyism, Nature, Nature editorial, Peer Review, Research Integrity, Retraction, Retraction Watch, Scientific Misconduct, Scientific publication

Retraction Watch’s Fierce Retort to Nature

Retraction Watch seems to be well on its way to leave a mark on the academic establishment and dictate policy on research ethics. Its posts so often tinged by anger and resentment have gained enormous traction on the web, exposing disturbing human traits. This should not come as a surprise, after all, one man’s sorrow is another man’s joy, and Retraction Watch focuses on career failure. Thus, the scathing posts of Retraction Watch show up prominently in the first page of google searches for individuals, tarnishing reputations in the eyes of those who choose to take them seriously.

One comes across illustrations of their hate-fuelled prose almost daily. For example, as if reacting in defiance to my recent post entitled “Retraction Watch: Any dignity left?”, Retraction Watch published today another post vilifying Diederik Stapel, the Dutch researcher who allegedly admitted fraud and paid his dues to society. First, Adam Marcus, a major blogger at Retraction Watch published an ugly note expressing his outrage at the fact that Dr. Stapel was able to get a job. None of your business, Mr. Marcus! Today his pal Ivan Oransky hastily posted an even uglier note indicating that Stapel had already resigned from the job he managed to get. Oransky seems joyful and relieved that Stapel’s job was so short lived. Previously in a comment, Oransky admitted to be “very interested in the downstream consequences of fraud”. To be consistent, he has extensively and scrupulously covered all recent fraud-related suicides. Also today, Cat Ferguson, the Retraction Watch intern, started her ugly post about an Israeli Mathematician with: “You know it’s a good one when it makes it onto the Wikipedia page for “scientific misconduct”…”.

Oransky
The source of the picture on the left is this article at Yale Medicince.

These ungainly posts build up a poisonous atmosphere best reflected in Ivan Oransky’s fierce retort to a recent Nature editorial on retractions. Nature’s cautious reflections contrast starkly with Oransky’s McCarthyian fury illustrated for example by the following passage:

“We would argue that journals like Nature actually have a tremendous amount of power. If Nature thinks that they “have neither the authority nor the means to police authors or their institutions,” the editors should sit down with Anesthesia & Analgesia editor in chief Steven Shafer, who gathered a consortium of journal editors that held institutions’ feet to the fire and led to retractions in the Joachim Boldt and Yoshitaka Fujii cases. One can only imagine how quickly a dean would return a call from Nature.”

Notice Oransky’s medieval tone in “holding institutions’ feet to the fire”, as if he were prescribing an auto-da-fe.

After this rant, Oransky charged again:

“And why not issue an expression of concern about papers during those years while it’s being investigated? How does Nature justify, for example, leaving the dance symmetry paper in the literature for for five years after authors requested a retraction? Unless, of course, you’re worried about losing those citations, the first two years of which will count toward your impact factor.”

This paragraph has so much hatred in it! An expression of concern would be particularly unfair because it informs the readers of an unresolved situation but at the same time tarnishes the author’s reputation. A person is presumed innocent until and unless proven guilty, isn’t that so, Mr. Oransky?

I find the rest of Oransky’s retort equally revolting and simply cannot bring myself to keep discussing it. It is ultimately up to readers to judge.

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